Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
annotation_location_indices() (in module meshparty.spatial_annotations)
annotation_skeleton_segments() (in module meshparty.spatial_annotations)
apply_mask() (meshparty.skeleton.Skeleton method)
array_if_scalar() (in module meshparty.utils)
assign_windows() (in module meshparty.skeleton_utils)
axon_split_quality() (in module meshparty.spatial_annotations)
B
branch_points (meshparty.skeleton.Skeleton property)
branch_points_undirected (meshparty.skeleton.Skeleton property)
C
calculate_skeleton_paths_on_mesh() (in module meshparty.skeletonize)
camera_from_ngl_state() (in module meshparty.trimesh_vtk)
camera_from_quat() (in module meshparty.trimesh_vtk)
cc_vertex_thresh (meshparty.skeleton.SkeletonMetadata attribute)
child_nodes() (meshparty.skeleton.Skeleton method)
collapse_function (meshparty.skeleton.SkeletonMetadata attribute)
collapse_params (meshparty.skeleton.SkeletonMetadata attribute)
collapse_soma (meshparty.skeleton.SkeletonMetadata attribute)
collapse_soma_skeleton() (in module meshparty.skeletonize)
collapse_zero_length_edges() (in module meshparty.utils)
compute_radius (meshparty.skeleton.SkeletonMetadata attribute)
connected_component_slice() (in module meshparty.utils)
copy() (meshparty.skeleton.Skeleton method)
cover_paths (meshparty.skeleton.Skeleton property)
cover_paths_specific() (meshparty.skeleton.Skeleton method)
cover_paths_with_parent() (meshparty.skeleton.Skeleton method)
create_csgraph() (in module meshparty.utils)
create_nxgraph() (in module meshparty.utils)
csgraph (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
csgraph_binary (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
csgraph_binary_undirected (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
csgraph_undirected (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
cut_graph() (meshparty.skeleton.Skeleton method)
D
decimate_trimesh() (in module meshparty.trimesh_vtk)
default() (meshparty.utils_io.NumpyEncoder method)
dist_from_line() (in module meshparty.utils)
distance_to_root (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
downstream_nodes() (meshparty.skeleton.Skeleton method)
E
edge_averaged_vertex_property() (in module meshparty.utils)
edges (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
end_points (meshparty.skeleton.Skeleton property)
end_points_undirected (meshparty.skeleton.Skeleton property)
export_to_swc() (in module meshparty.skeleton_io)
(meshparty.skeleton.Skeleton method)
F
filter_close_to_line() (in module meshparty.mesh_filters)
(in module meshparty.utils)
filter_components_by_size() (in module meshparty.mesh_filters)
filter_geodesic_distance() (in module meshparty.mesh_filters)
filter_largest_component() (in module meshparty.mesh_filters)
filter_shapes() (in module meshparty.utils)
filter_spatial_distance_from_points() (in module meshparty.mesh_filters)
filter_two_point_distance() (in module meshparty.mesh_filters)
filter_unmasked_boolean() (in module meshparty.utils)
(meshparty.skeleton.Skeleton method)
filter_unmasked_indices() (in module meshparty.utils)
(meshparty.skeleton.Skeleton method)
filter_unmasked_indices_padded() (in module meshparty.utils)
(meshparty.skeleton.Skeleton method)
find_axon_split_vertex_by_synapse_betweenness() (in module meshparty.spatial_annotations)
find_far_points() (in module meshparty.utils)
find_far_points_graph() (in module meshparty.utils)
G
get_path() (in module meshparty.utils)
graph_to_vtk() (in module meshparty.trimesh_vtk)
H
hops_to_root (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
I
indices_to_slice() (in module meshparty.utils)
indices_unmasked (meshparty.skeleton.Skeleton property)
invalidation_d (meshparty.skeleton.SkeletonMetadata attribute)
inverse_voxel_scaling (meshparty.skeleton.StaticSkeleton property)
K
kdtree (meshparty.skeleton.Skeleton property)
L
linked_point_actor() (in module meshparty.trimesh_vtk)
LocalViewIterator (class in meshparty.iterator)
M
make_camera_interpolator() (in module meshparty.trimesh_vtk)
make_windows() (in module meshparty.skeleton_utils)
map_boolean_to_unmasked() (in module meshparty.utils)
(meshparty.skeleton.Skeleton method)
map_indices_to_unmasked() (in module meshparty.utils)
(meshparty.skeleton.Skeleton method)
mask_from_indices() (meshparty.skeleton.Skeleton method)
mesh_actor() (in module meshparty.trimesh_vtk)
mesh_index (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
mesh_teasar() (in module meshparty.skeletonize)
mesh_to_skel_map (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
mesh_to_skel_map_base (meshparty.skeleton.Skeleton property)
meshparty
module
meshparty.iterator
module
meshparty.mesh_filters
module
meshparty.mesh_skel_utils
module
meshparty.meshlabserver
module
meshparty.skeleton
module
meshparty.skeleton_io
module
meshparty.skeleton_utils
module
meshparty.skeletonize
module
meshparty.spatial_annotations
module
meshparty.trimesh_vtk
module
meshparty.utils
module
meshparty.utils_io
module
meta (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.SkeletonMetadata attribute)
module
meshparty
meshparty.iterator
meshparty.mesh_filters
meshparty.mesh_skel_utils
meshparty.meshlabserver
meshparty.skeleton
meshparty.skeleton_io
meshparty.skeleton_utils
meshparty.skeletonize
meshparty.spatial_annotations
meshparty.trimesh_vtk
meshparty.utils
meshparty.utils_io
mutual_closest_edges() (in module meshparty.utils)
N
n_branch_points (meshparty.skeleton.Skeleton property)
n_end_points (meshparty.skeleton.Skeleton property)
n_vertices (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
nanfilter_shapes() (in module meshparty.utils)
node_mask (meshparty.skeleton.Skeleton property)
numpy_rep_to_vtk() (in module meshparty.trimesh_vtk)
numpy_to_vtk_cells() (in module meshparty.trimesh_vtk)
NumpyEncoder (class in meshparty.utils_io)
O
oriented_camera() (in module meshparty.trimesh_vtk)
P
parent_nodes() (meshparty.skeleton.Skeleton method)
(meshparty.skeleton.StaticSkeleton method)
path_between() (meshparty.skeleton.Skeleton method)
path_from_predecessors() (in module meshparty.utils)
path_length() (meshparty.skeleton.Skeleton method)
path_to_root() (meshparty.skeleton.Skeleton method)
(meshparty.skeleton.StaticSkeleton method)
paths_to_edges() (in module meshparty.utils)
point_cloud_actor() (in module meshparty.trimesh_vtk)
point_to_skel_meshpath() (in module meshparty.mesh_skel_utils)
poly_to_mesh_components() (in module meshparty.trimesh_vtk)
process_colors() (in module meshparty.trimesh_vtk)
pykdtree (meshparty.skeleton.Skeleton property)
R
radius (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
read_skeleton_h5() (in module meshparty.skeleton_io)
read_skeleton_h5_by_part() (in module meshparty.skeleton_io)
reduce_vertices() (in module meshparty.utils)
reduce_verts() (in module meshparty.skeletonize)
remap_dict() (in module meshparty.utils)
remove_unused_verts() (in module meshparty.utils)
remove_zero_length_edges (meshparty.skeleton.SkeletonMetadata attribute)
render_actors() (in module meshparty.trimesh_vtk)
render_actors_360() (in module meshparty.trimesh_vtk)
render_movie() (in module meshparty.trimesh_vtk)
render_movie_flexible() (in module meshparty.trimesh_vtk)
reroot() (meshparty.skeleton.Skeleton method)
(meshparty.skeleton.StaticSkeleton method)
resample() (in module meshparty.skeleton)
(in module meshparty.skeletonize)
resample_path() (in module meshparty.skeleton_utils)
reset_mask() (meshparty.skeleton.Skeleton method)
root (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
root_id (meshparty.skeleton.SkeletonMetadata attribute)
root_position (meshparty.skeleton.Skeleton property)
run_meshlab_script() (in module meshparty.meshlabserver)
run_meshlab_script_on_dir() (in module meshparty.meshlabserver)
S
scale_bar_actor() (in module meshparty.trimesh_vtk)
segment_map (meshparty.skeleton.Skeleton property)
segments (meshparty.skeleton.Skeleton property)
segments_plus (meshparty.skeleton.Skeleton property)
setup_root() (in module meshparty.skeletonize)
shape_function (meshparty.skeleton.SkeletonMetadata attribute)
Skeleton (class in meshparty.skeleton)
skeleton_actor() (in module meshparty.trimesh_vtk)
skeleton_type (meshparty.skeleton.SkeletonMetadata attribute)
SkeletonIndex (meshparty.skeleton.Skeleton property)
skeletonize_components() (in module meshparty.skeletonize)
skeletonize_kwargs() (meshparty.skeleton.SkeletonMetadata method)
skeletonize_mesh() (in module meshparty.skeletonize)
SkeletonMetadata (class in meshparty.skeleton)
skind_to_anno_map() (in module meshparty.spatial_annotations)
smooth_graph() (in module meshparty.skeletonize)
smooth_iterations (meshparty.skeleton.SkeletonMetadata attribute)
smooth_neighborhood (meshparty.skeleton.SkeletonMetadata attribute)
smooth_r (meshparty.skeleton.SkeletonMetadata attribute)
smooth_vertices (meshparty.skeleton.SkeletonMetadata attribute)
soma_pt_x (meshparty.skeleton.SkeletonMetadata attribute)
soma_pt_y (meshparty.skeleton.SkeletonMetadata attribute)
soma_pt_z (meshparty.skeleton.SkeletonMetadata attribute)
soma_radius (meshparty.skeleton.SkeletonMetadata attribute)
soma_via_branch_starts() (in module meshparty.skeletonize)
soma_via_sphere() (in module meshparty.skeletonize)
split_axon_by_synapse_betweenness() (in module meshparty.spatial_annotations)
StaticSkeleton (class in meshparty.skeleton)
swc_node_labels() (in module meshparty.skeleton_io)
synapse_betweenness() (in module meshparty.spatial_annotations)
T
timestamp (meshparty.skeleton.SkeletonMetadata attribute)
topo_points (meshparty.skeleton.Skeleton property)
trimesh_to_vtk() (in module meshparty.trimesh_vtk)
U
unmasked_size (meshparty.skeleton.Skeleton property)
update_metameta() (meshparty.skeleton.SkeletonMetadata method)
V
values_to_colors() (in module meshparty.trimesh_vtk)
vertices (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
voxel_scaling (meshparty.skeleton.Skeleton property)
(meshparty.skeleton.StaticSkeleton property)
vtk_cellarray_to_shape() (in module meshparty.trimesh_vtk)
W
write_skeleton_h5() (in module meshparty.skeleton_io)
write_skeleton_h5_by_part() (in module meshparty.skeleton_io)
write_to_h5() (meshparty.skeleton.Skeleton method)
MeshParty
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